Introduction | Functions | Chemical Details Resource | Get chemical data | By DTXSID | By DTXCID | Chemical Property Resource | Chemical Fate Resource | Chemical Search Resource | By starting value | By exact value | By substring value | Subset for MS-Ready Structures | Mass Range | Chemical Formula | DTXCID | List Resource | All lists by type | List by name | Lists containing a specific chemical | Chemicals in a specific list | Chemical File Resource | Get mrv by DTXSID or DTXCID | Get mol by DTXSID or DTXCID | Get structure image by DTXSID or DTXCID | Chemical Synonym Resource | Example Use Case: Comparing Physico-chemical Properties Across Chemical Lists | Obtain Lists of Chemicals | Access Physico-chemical Property Data for Chemical Lists | Review Physico-Chemical Properties Across Chemical Lists | Vapor Pressure | Henry's Law constant | Boling Point | Conclusion
Package: ccdR 1.1.0
Paul Kruse
ccdR: Utilities for Interacting with the 'CTX' APIs
Access chemical, hazard, bioactivity, and exposure data from the Computational Toxicology and Exposure ('CTX') APIs <https://api-ccte.epa.gov/docs/>. 'ccdR' was developed to streamline the process of accessing the information available through the 'CTX' APIs without requiring prior knowledge of how to use APIs. Most data is also available on the CompTox Chemical Dashboard ('CCD') <https://comptox.epa.gov/dashboard/> and other resources found at the EPA Computational Toxicology and Exposure Online Resources <https://www.epa.gov/comptox-tools>.
Authors:
ccdR_1.1.0.tar.gz
ccdR_1.1.0.zip(r-4.7)ccdR_1.1.0.zip(r-4.6)ccdR_1.1.0.zip(r-4.5)
ccdR_1.1.0.tgz(r-4.6-any)ccdR_1.1.0.tgz(r-4.5-any)
ccdR_1.1.0.tar.gz(r-4.7-any)ccdR_1.1.0.tar.gz(r-4.6-any)
ccdR_1.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
ccdR/json (API)
| # Install 'ccdR' in R: |
| install.packages('ccdR', repos = c('https://usepa.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/usepa/ccdr/issues
Datasets:
- bioactivity_api_server - Bioactivity API Server url
- chemical_api_server - Chemical API Server url
- exposure_api_server - Exposure API Server url
- hazard_api_server - Hazard API Server url
Last updated from:9efb857b39. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 181 | ||
| source / vignettes | OK | 242 | ||
| linux-release-x86_64 | OK | 171 | ||
| macos-release-arm64 | OK | 118 | ||
| macos-oldrel-arm64 | OK | 120 | ||
| windows-devel | OK | 98 | ||
| windows-release | OK | 120 | ||
| windows-oldrel | OK | 96 | ||
| wasm-release | OK | 190 |
Exports:ccdr_hide_api_keyccdr_show_api_keychemical_containschemical_contains_batchchemical_equalchemical_equal_batchchemical_starts_withchemical_starts_with_batchctx_keyget_all_assaysget_all_public_chemical_listsget_annotation_by_aeidget_annotation_by_aeid_batchget_bioactivity_detailsget_bioactivity_details_batchget_bioactivity_endpoint_statusget_bioactivity_summaryget_bioactivity_summary_batchget_cancer_hazardget_cancer_hazard_batchget_chem_infoget_chem_info_batchget_chemical_by_property_rangeget_chemical_by_property_range_batchget_chemical_detailsget_chemical_details_batchget_chemical_endpoint_statusget_chemical_imageget_chemical_image_batchget_chemical_lists_by_typeget_chemical_lists_by_type_batchget_chemical_molget_chemical_mol_batchget_chemical_mrvget_chemical_mrv_batchget_chemical_synonymget_chemical_synonym_batchget_chemicals_in_listget_chemicals_in_list_batchget_ecotox_hazard_by_dtxsidget_ecotox_hazard_by_dtxsid_batchget_exposure_endpoint_statusget_exposure_functional_useget_exposure_functional_use_batchget_exposure_functional_use_categoryget_exposure_functional_use_probabilityget_exposure_functional_use_probability_batchget_exposure_list_presence_tagsget_exposure_list_presence_tags_by_dtxsidget_exposure_list_presence_tags_by_dtxsid_batchget_exposure_product_dataget_exposure_product_data_batchget_exposure_product_data_pucget_fate_by_dtxsidget_fate_by_dtxsid_batchget_genetox_detailsget_genetox_details_batchget_genetox_summaryget_genetox_summary_batchget_hazard_by_dtxsidget_hazard_by_dtxsid_batchget_hazard_endpoint_statusget_human_hazard_by_dtxsidget_human_hazard_by_dtxsid_batchget_inchiget_inchikeyget_lists_containing_chemicalget_lists_containing_chemical_batchget_msready_by_dtxcidget_msready_by_dtxcid_batchget_msready_by_formulaget_msready_by_formula_batchget_msready_by_massget_msready_by_mass_batchget_msready_by_mass_with_error_batchget_public_chemical_list_by_nameget_public_chemical_list_by_name_batchget_skin_eye_hazardget_skin_eye_hazard_batchget_smileshas_ccdr_optionhas_ccdr_optionshas_ctx_keyregister_ccdrset_ccdr_optionshowing_key
Dependencies:askpassclicpp11curldata.tabledplyrgenericsgluehttrjsonlitelifecyclemagrittrmimeopensslpillarpkgconfigpurrrR6Rcpprlangstringistringrsystibbletidyrtidyselecttriebeardurltoolsutf8vctrswithr
Chemical API
Last update: 2024-07-09
Started: 2024-03-01
Getting started with ccdR: Introduction Vignette
Introduction to the CompTox Chemicals Dashboard (CCD) | Searching one chemical at a time (single-substance search) | Batch search | Challenges of web-based dashboard search | Application Programming Interfaces (APIs) for Automated Batch Search of the CCD | Authentication | Request Construction | Introduction to ccdR | Package Settings | API Key Storage | Quick Start Examples | Chemical API | Chemical Details Resource | Chemical Property Resource | Hazard API | Hazard Resource | Bioactivity API | Bioactivity Resource | Conclusion
Last update: 2024-06-27
Started: 2024-03-07
Bioactivity API
Introduction | Functions | Bioactivity Assay Resource | Get annotation by aeid | Get all assay annotations | Bioactivity Data Resource | Get summary data | Get data | Conclusion
Last update: 2024-06-27
Started: 2024-03-01
Exposure API
Introduction | Functions | Functional Use Resource | Exposure Functional Use | Exposure Functional Use Probability | Exposure Functional Use Categories | Product Data Resource | Exposure Product Data | Exposure Product Use Category Data | List Presence Resource | List Presence Tags | List Presence Tag Data | Batch Search | Functional use probability batch | Conclusion
Last update: 2024-06-27
Started: 2024-06-05
Hazard API
Introduction | Functions | Hazard Resource | Get Hazard Data by DTXSID | Get Human Hazard Data by DTXSID | Get EcoTox Hazard Data by DTXSID | Skin Eye Resource | Cancer Resource | Genetox Resource | Example Use Case: Comparing Hazard Data Across Chemical Lists | Obtain Lists of Chemicals | Review Genotoxicity Data for a Single Chemical | Review Genotoxicity Data for Chemical Lists | Review Hazard Data for Chemical Lists | Conclusion
Last update: 2024-06-27
Started: 2024-03-01
