Introduction | Bioactivity Assay Resource | Get annotation by aeid | Get all assay annotations | Bioactivity Data Resource | Get summary data | Get data | Conclusion
Package: ctxR 1.1.3.9000
Madison Feshuk
ctxR: Utilities for Interacting with the 'CTX' APIs
Access chemical, hazard, bioactivity, and exposure data from the Computational Toxicology and Exposure ('CTX') APIs <https://www.epa.gov/comptox-tools/computational-toxicology-and-exposure-apis>. 'ctxR' was developed to streamline the process of accessing the information available through the 'CTX' APIs without requiring prior knowledge of how to use APIs. Most data is also available on the CompTox Chemical Dashboard ('CCD') <https://comptox.epa.gov/dashboard/> and other resources found at the EPA Computational Toxicology and Exposure Online Resources <https://www.epa.gov/comptox-tools>.
Authors:
ctxR_1.1.3.9000.tar.gz
ctxR_1.1.3.9000.zip(r-4.7)ctxR_1.1.3.9000.zip(r-4.6)ctxR_1.1.3.9000.zip(r-4.5)
ctxR_1.1.3.9000.tgz(r-4.6-any)ctxR_1.1.3.9000.tgz(r-4.5-any)
ctxR_1.1.3.9000.tar.gz(r-4.7-any)ctxR_1.1.3.9000.tar.gz(r-4.6-any)
ctxR_1.1.3.9000.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
ctxR/json (API)
| # Install 'ctxR' in R: |
| install.packages('ctxR', repos = c('https://usepa.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/usepa/ctxr/issues
Pkgdown/docs site:https://usepa.github.io
Datasets:
- bioactivity_api_server - Bioactivity API Server url
- chemical_api_server - Chemical API Server url
- exposure_api_server - Exposure API Server url
- hazard_api_server - Hazard API Server url
Last updated from:f0e5d20267. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 212 | ||
| source / vignettes | OK | 246 | ||
| linux-release-x86_64 | OK | 184 | ||
| macos-release-arm64 | OK | 132 | ||
| macos-oldrel-arm64 | OK | 120 | ||
| windows-devel | OK | 183 | ||
| windows-release | OK | 143 | ||
| windows-oldrel | OK | 134 | ||
| wasm-release | OK | 158 |
Exports:check_existence_by_dtxsidcheck_existence_by_dtxsid_batchchemical_containschemical_contains_batchchemical_equalchemical_equal_batchchemical_starts_withchemical_starts_with_batchctx_keyctxR_hide_api_keyctxR_show_api_keyget_aggregate_records_by_dtxsidget_aggregate_records_by_dtxsid_batchget_aggregate_records_by_mediumget_aggregate_records_by_medium_batchget_all_assaysget_all_list_typesget_all_public_chemical_listsget_annotation_by_aeidget_annotation_by_aeid_batchget_bioactivity_detailsget_bioactivity_details_batchget_bioactivity_endpoint_statusget_bioactivity_summaryget_bioactivity_summary_batchget_biomonitoring_dataget_biomonitoring_data_batchget_cancer_hazardget_cancer_hazard_batchget_chem_infoget_chem_info_batchget_chem_props_expget_chem_props_exp_batchget_chem_props_predget_chem_props_pred_batchget_chem_props_summaryget_chemical_by_property_rangeget_chemical_by_property_range_batchget_chemical_detailsget_chemical_details_batchget_chemical_endpoint_statusget_chemical_imageget_chemical_image_batchget_chemical_lists_by_typeget_chemical_lists_by_type_batchget_chemical_molget_chemical_mol_batchget_chemical_mrvget_chemical_mrv_batchget_chemical_synonymget_chemical_synonym_batchget_chemical_weight_fractionget_chemical_weight_fraction_batchget_chemicals_in_listget_chemicals_in_list_batchget_chemicals_in_list_containget_chemicals_in_list_contain_batchget_chemicals_in_list_exactget_chemicals_in_list_exact_batchget_chemicals_in_list_startget_chemicals_in_list_start_batchget_demographic_exposure_predictionget_demographic_exposure_prediction_batchget_ecotox_hazard_by_dtxsidget_ecotox_hazard_by_dtxsid_batchget_exposure_endpoint_statusget_exposure_functional_useget_exposure_functional_use_batchget_exposure_functional_use_categoryget_exposure_functional_use_probabilityget_exposure_functional_use_probability_batchget_exposure_list_presence_tagsget_exposure_list_presence_tags_by_dtxsidget_exposure_list_presence_tags_by_dtxsid_batchget_exposure_product_dataget_exposure_product_data_batchget_exposure_product_data_pucget_fate_by_dtxsidget_fate_by_dtxsid_batchget_general_exposure_predictionget_general_exposure_prediction_batchget_general_use_keywordsget_general_use_keywords_batchget_genetox_detailsget_genetox_details_batchget_genetox_summaryget_genetox_summary_batchget_hazard_by_dtxsidget_hazard_by_dtxsid_batchget_hazard_endpoint_statusget_httk_dataget_httk_data_batchget_human_hazard_by_dtxsidget_human_hazard_by_dtxsid_batchget_inchiget_inchikeyget_lists_containing_chemicalget_lists_containing_chemical_batchget_medium_categoriesget_msready_by_dtxcidget_msready_by_dtxcid_batchget_msready_by_formulaget_msready_by_formula_batchget_msready_by_massget_msready_by_mass_batchget_msready_by_mass_with_error_batchget_product_use_categories_batchget_product_use_categoryget_production_volumeget_production_volume_batchget_public_chemical_list_by_nameget_public_chemical_list_by_name_batchget_reported_functional_useget_reported_functional_use_batchget_single_sample_records_by_dtxsidget_single_sample_records_by_dtxsid_batchget_single_sample_records_by_mediumget_single_sample_records_by_medium_batchget_skin_eye_hazardget_skin_eye_hazard_batchget_smileshas_ctx_keyhas_ctxR_optionhas_ctxR_optionsregister_ctx_api_keyset_ctxR_optionshowing_key
Dependencies:askpassclicpp11curldata.tabledplyrgenericsgluehttrjsonlitelifecyclemagrittrmimeopensslpillarpkgconfigpurrrR6Rcpprlangstringistringrsystibbletidyrtidyselecttriebeardurltoolsutf8vctrswithr
ctxR: Bioactivity API
Last update: 2025-10-08
Started: 2025-01-23
ctxR: Utilities for Interacting with the CTX APIs in R
Introduction to the CCD | Searching one chemical at a time (single-substance search) | Batch search | Challenges of web-based dashboard search | Introduction to the CTX APIs | Authentication | Request Construction | Introduction to ctxR | Package Settings | API Key Storage | Quick Start Examples | Chemical API | Chemical Details Resource | Chemical Property Resource | Hazard API | Hazard Resource | Bioactivity API | Bioactivity Resource | Conclusion
Last update: 2025-10-06
Started: 2025-01-23
ctxR: Chemical API
Introduction | Chemical Details Resource | Get chemical data | By DTXSID | By DTXCID | By Batch Search | Pubchem Link to GHS classification | GHS classification | Chemical Property Resource | Chemical Fate Resource | Chemical Search Resource | By starting value | By exact value | By substring value | Subset for MS-Ready Structures | By Mass Range | By Chemical Formula | List Resource | Get all list types | All lists by type | List by name | Lists containing a specific chemical | DTXSIDs for chemical list and starting value | DTXSIDs for chemical list and exact value | DTXSIDs for chemical list and containing value | Chemicals in a specific list | Chemical File Resource | Get mrv by DTXSID or DTXCID | Get mol by DTXSID or DTXCID | Get structure image by DTXSID, DTXCID, or SMILES | Chemical Synonym Resource | Conclusion
Last update: 2025-10-06
Started: 2025-01-23
ctxR: Hazard API
Introduction | Hazard Resource | Get Hazard Data by DTXSID | Skin Eye Resource | Cancer Resource | Genetox Resource | Example Use Case: Comparing Hazard Data Across Chemical Lists | Obtain Lists of Chemicals | Review Genotoxicity Data for a Single Chemical | Review Genotoxicity Data for Chemical Lists | Conclusion
Last update: 2025-10-06
Started: 2025-01-23
ctxR: Exposure API
Introduction | Functional Use Resource | Functional Use | Functional Use Probability | Functional Use Probability Batch | Functional Use Categories | Product Data Resource | Product Data | Product Use Category Data | httk Data Resource | httk Data | List Presence Resource | List Presence Tags | List Presence Tag Data | Exposure Predictions | General Exposure Predictions | Demographic Exposure Predictions | Comptox Chemicals Dashboard (CCD) | Biomonitoring data | Chemical use and weight fractions | Multimedia Database (MMDB) | Medium Categories | Single Sample records | Aggregate Records | Batch Search | Conclusion
Last update: 2025-10-06
Started: 2025-01-23
