Package: MCSimMod 1.2

Dustin F. Kapraun

MCSimMod: Working with 'MCSim' Models

Tools that facilitate ordinary differential equation (ODE) modeling in 'R'. This package allows one to perform simulations for ODE models that are encoded in the GNU 'MCSim' model specification language (Bois, 2009) <doi:10.1093/bioinformatics/btp162> using ODE solvers from the 'R' package 'deSolve' (Soetaert et al., 2010) <doi:10.18637/jss.v033.i09>.

Authors:Dustin F. Kapraun [aut, cre], Todd J. Zurlinden [aut], Andrew J. Shapiro [aut], Ryan D. Friese [aut], Frederic Y. Bois [ctb], Free Software Foundation, Inc. [cph]

MCSimMod_1.2.tar.gz
MCSimMod_1.2.zip(r-4.7)MCSimMod_1.2.zip(r-4.6)MCSimMod_1.2.zip(r-4.5)
MCSimMod_1.2.tgz(r-4.6-x86_64)MCSimMod_1.2.tgz(r-4.6-arm64)MCSimMod_1.2.tgz(r-4.5-x86_64)MCSimMod_1.2.tgz(r-4.5-arm64)
MCSimMod_1.2.tar.gz(r-4.7-x86_64)MCSimMod_1.2.tar.gz(r-4.6-x86_64)
MCSimMod_1.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
MCSimMod/json (API)

# Install 'MCSimMod' in R:
install.packages('MCSimMod', repos = c('https://usepa.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/usepa/mcsimmod/issues

On CRAN:

Conda:

odeode-modelpbpkpbpk-modeling

7.01 score 10 stars 15 scripts 210 downloads 2 exports 1 dependencies

Last updated from:5e74f063b5. Checks:2 FAIL, 11 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64FAIL3743
linux-devel-x86_64OK113
source / vignettesOK164
linux-release-arm64FAIL3709
linux-release-x86_64OK115
macos-release-arm64OK93
macos-release-x86_64OK208
macos-oldrel-arm64OK74
macos-oldrel-x86_64OK206
windows-develOK91
windows-releaseOK107
windows-oldrelOK127
wasm-releaseOK103

Exports:compileModelcreateModel

Dependencies:deSolve

(1) Introduction to MCSimMod
Rendered fromintro.Rmdusingknitr::rmarkdown

Last update: 2025-08-15
Started: 2025-08-15

(2) MCSimMod Details
Object-Oriented Design | Model Specification | Creating a Model object | Using a Model object | Translating and compiling MCSim model specification text without creating a Model object
Rendered fromdetails.Rmdusingknitr::rmarkdown

Last update: 2025-08-15
Started: 2025-08-15

(3) Model Specification
A Mathematical Model for Exponential Growth or Decay | MCSim Model Specification | Element 1: States | Element 2: Outputs | Element 3: Inputs | Element 4: Parameters | Element 5: Initialize Section | Element 6: Dynamics Section | Element 7: End Keyword | Building the Model | Solving an Initial Value Problem (i.e., Performing a Model Simulation) | Examining the Results
Rendered frommodel_specification.Rmdusingknitr::rmarkdown

Last update: 2025-08-15
Started: 2025-08-15

(4) A Model for Newton's Law of Cooling
Model Description | MCSim Model Specification | Building the Model | Predicting the Temperature of a Cup of Tea | Examining the Results
Rendered fromnewt_cool_demo.Rmdusingknitr::rmarkdown

Last update: 2025-08-15
Started: 2024-08-22

(5) A Predator-Prey Model
Model Description | MCSim Model Specification | Building the Model | Predicting the Numbers of Rabbits and Foxes | Examining the Results
Rendered frompred_prey_demo.Rmdusingknitr::rmarkdown

Last update: 2025-08-15
Started: 2024-08-22

(6) A Classical Pharmacokinetic Model
Model Description | MCSim Model Specification | Building the Model | Predicting the Blood Concentration of a Substance Following an Oral Dose | Examining the Results | Predicting the Blood Concentration of a Substance Following an IV Dose | Comparing AUC Values for Oral and IV Dosing Scenarios
Rendered frompk1_demo.Rmdusingknitr::rmarkdown

Last update: 2025-08-15
Started: 2024-08-22

(7) Using Input Variables
Input Variables | A Classical Pharmacokinetic Model | MCSim Model Specification | Building the Model | Predicting the Blood Concentration of a Substance Following Oral Dosing | Examining the Results
Rendered frominputs_demo.Rmdusingknitr::rmarkdown

Last update: 2025-08-15
Started: 2024-08-22

(8) Incorporating Events into a Simulation
Events | A Classical Pharmacokinetic Model | MCSim Model Specification | Building the Model | Predicting the Blood Concentration of a Substance During Repeated Oral Dosing using Events | Examining the Results
Rendered fromevents_demo.Rmdusingknitr::rmarkdown

Last update: 2025-08-15
Started: 2024-08-22

(9) A Physiologically Based Pharmacokinetic Model
Model Description | MCSim Model Specification | Building the Model | Verifying Conservation of Mass | Verifying Conservation of Flow | Examining the Simulation Results
Rendered frompbpk_demo.Rmdusingknitr::rmarkdown

Last update: 2025-08-15
Started: 2025-08-15