Package: tcpl
Title: ToxCast Data Analysis Pipeline
Version: 3.3.0.9000
Authors@R: c(
    person("Dayne L", "Filer", role = "aut"),
    person("Jason", "Brown", role = "ctb", comment = c(ORCID = "0009-0000-2294-641X")),
    person("Madison","Feshuk",role = "cre",email = "feshuk.madison@epa.gov", comment = c(ORCID = "0000-0002-1390-6405")),
    person("Carter", "Thunes", role = "ctb"),
    person("Sarah E", "Davidson-Fritz", role = "ctb", email = "davidsonfritz.sarah@epa.gov", comment = c(ORCID = "0000-0002-2891-9380")),
    person("Kelly", "Carstens", role = "ctb", email = "carstens.kelly@epa.gov", comment = c(ORCID = "0000-0002-1746-5379")),
    person("Elizabeth", "Gilson", role = "ctb"),
    person("Lindsay","Knupp", role="ctb"),
    person("Lori","Kolaczkowski", role = "ctb"),
    person("Ashley", "Ko", role = "ctb"),
    person("Zhihui","Zhao", role="ctb"),
    person("Kurt", "Dunham", role = "ctb"),
    person("Todd", "Zurlinden", role="ctb", comment = c(ORCID = "0000-0003-1372-3913")),
    person("Parth", "Kothiya", role = "ctb"),
    person("Woodrow R", "Setzer", role = "ctb"),
    person("Matthew T", "Martin", role = c("ctb", "ths")),
    person("Richard S", "Judson",role = c("ctb","ths"), comment = c(ORCID = "0000-0002-2348-9633")),
    person("Katie", "Paul Friedman", role=c("ctb"), comment = c(ORCID = "0000-0002-2710-1691"))
    )
Description: The ToxCast Data Analysis Pipeline ('tcpl') is an R
        package that manages, curve-fits, plots, and stores ToxCast
        data to populate its linked MySQL database, 'invitrodb'. The
        package was developed for the chemical screening data curated
        by the US EPA's Toxicity Forecaster (ToxCast) program, but
        'tcpl' can be used to support diverse chemical screening
        efforts.
URL: https://github.com/USEPA/CompTox-ToxCast-tcpl,
        https://www.epa.gov/comptox-tools/toxicity-forecasting-toxcast
Depends: R (>= 4.1.0)
Imports: data.table (>= 1.15.0), DBI, RMariaDB, numDeriv, RColorBrewer,
        utils, stats, methods, graphics, grDevices, sqldf, dplyr,
        tidyr, plotly, tcplfit2, ggplot2 (>= 3.5.2), gridExtra,
        stringr, rlang, ctxR (>= 1.1.3), viridis, gt
Suggests: roxygen2, knitr, prettydoc, rmarkdown, htmlTable, testthat
        (>= 3.0.0), reshape2, kableExtra, colorspace, magrittr, vdiffr,
        httptest, rmdformats, gtable
License: MIT + file LICENSE
LazyData: true
RoxygenNote: 7.3.3
VignetteBuilder: knitr
Encoding: UTF-8
Config/testthat/edition: 3
BugReports: https://github.com/USEPA/CompTox-ToxCast-tcpl/issues
Config/pak/sysreqs: cmake make libicu-dev libmysqlclient-dev libuv1-dev
        libxml2-dev libssl-dev libnode-dev
Repository: https://usepa.r-universe.dev
Date/Publication: 2025-10-16 18:19:21 UTC
RemoteUrl: https://github.com/usepa/comptox-toxcast-tcpl
RemoteRef: HEAD
RemoteSha: 04994c660cd8ac4949594c2d25828fa431dfc118
NeedsCompilation: no
Packaged: 2026-06-23 08:50:46 UTC; root
Author: Dayne L Filer [aut],
  Jason Brown [ctb] (ORCID: <https://orcid.org/0009-0000-2294-641X>),
  Madison Feshuk [cre] (ORCID: <https://orcid.org/0000-0002-1390-6405>),
  Carter Thunes [ctb],
  Sarah E Davidson-Fritz [ctb] (ORCID:
    <https://orcid.org/0000-0002-2891-9380>),
  Kelly Carstens [ctb] (ORCID: <https://orcid.org/0000-0002-1746-5379>),
  Elizabeth Gilson [ctb],
  Lindsay Knupp [ctb],
  Lori Kolaczkowski [ctb],
  Ashley Ko [ctb],
  Zhihui Zhao [ctb],
  Kurt Dunham [ctb],
  Todd Zurlinden [ctb] (ORCID: <https://orcid.org/0000-0003-1372-3913>),
  Parth Kothiya [ctb],
  Woodrow R Setzer [ctb],
  Matthew T Martin [ctb, ths],
  Richard S Judson [ctb, ths] (ORCID:
    <https://orcid.org/0000-0002-2348-9633>),
  Katie Paul Friedman [ctb] (ORCID:
    <https://orcid.org/0000-0002-2710-1691>)
Maintainer: Madison Feshuk <feshuk.madison@epa.gov>