{ "_id": "6a101c0facfb0bcc41c87913", "Package": "invitroTKstats", "Version": "0.0.14", "Date": "2026-01-22", "Title": "In Vitro Toxicokinetic Data Processing and Analysis Pipeline", "Description": "A set of tools for processing and analyzing in vitro\ntoxicokinetic measurements in a standardized and reproducible\npipeline. The package was developed to perform frequentist and\nBayesian estimation on a variety of in vitro toxicokinetic\nmeasurements including -- but not limited to -- chemical\nfraction unbound in the presence of plasma (f_up), intrinsic\nhepatic clearance (Clint, uL/min/million hepatocytes), and\nmembrane permeability for oral absorption (Caco2). 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"Fup RED Chemical Information Example Data set", "topics": [ "fup_red_cheminfo" ] }, { "page": "fup_red_L0", "title": "Fup RED Level-0 Example Data set", "topics": [ "fup_red_L0" ] }, { "page": "fup_red_L1", "title": "Fup RED Level-1 Example Data set", "topics": [ "fup_red_L1" ] }, { "page": "fup_red_L2", "title": "Fup RED Level-2 Example Data set", "topics": [ "fup_red_L2" ] }, { "page": "fup_red_L2_heldout", "title": "Fup RED Level-2 Heldout Example Data set", "topics": [ "fup_red_L2_heldout" ] }, { "page": "fup_red_L3", "title": "Fup RED Level-3 Example Data set", "topics": [ "fup_red_L3" ] }, { "page": "fup_red_L4", "title": "Fup RED Level-4 Example Data set", "topics": [ "fup_red_L4" ] }, { "page": "fup_red_PREJAGS", "title": "Fup RED Level-4 PREJAGS arguments", "topics": [ "fup_red_PREJAGS" ] }, { "page": "fup_uc_cheminfo", "title": "Fup UC Chemical Information Example Data set", "topics": [ "fup_uc_cheminfo" ] }, { "page": "fup_uc_L0", "title": "Fup UC Level-0 Example Data set", "topics": [ "fup_uc_L0" ] }, { "page": "fup_uc_L1", "title": "Fup UC Level-1 Example Data set", "topics": [ "fup_uc_L1" ] }, { "page": "fup_uc_L2", "title": "Fup UC Level-2 Example Data set", "topics": [ "fup_uc_L2" ] }, { "page": "fup_uc_L2_heldout", "title": "Fup UC Level-2 Heldout Example Data set", "topics": [ "fup_uc_L2_heldout" ] }, { "page": "fup_uc_L3", "title": "Fup UC Level-3 Example Data set", "topics": [ "fup_uc_L3" ] }, { "page": "fup_uc_L4", "title": "Fup UC Level-4 Example Data set", "topics": [ "fup_uc_L4" ] }, { "page": "fup_uc_PREJAGS", "title": "Fup UC Level-4 PREJAGS arguments", "topics": [ "fup_uc_PREJAGS" ] }, { "page": "Heaviside", "title": "Heaviside", "topics": [ "Heaviside" ] }, { "page": "initfunction_clint", "title": "Set Initial Values for Intrinsic Hepatic Clearance (Clint) Bayesian Model", "topics": [ "initfunction_clint" ] }, { "page": "initfunction_fup_red", "title": "Set Initial Values for Fup RED Bayesian Model", "topics": [ "initfunction_fup_red" ] }, { "page": "initfunction_fup_uc", "title": "Set Initial Values for Fup UC Bayesian Model", "topics": [ "initfunction_fup_uc" ] }, { "page": "L1.common.col", "title": "Common Columns in Level-1", "topics": [ "L1.common.col", "L1.common.cols" ] }, { "page": "merge_level0", "title": "Merge Multiple Level-0 files into a Single Table for Processing", "topics": [ "merge_level0" ] }, { "page": "plot_clint", "title": "Plot Mass Spectrometry Responses from Measurements of Intrinsic Hepatic Clearance", "topics": [ "plot_clint" ] }, { "page": "plot_fup_uc", "title": "Plot Mass Spectrometry Responses for Fraction Unbound in Plasma Data from Ultracentrifugation (UC)", "topics": [ "plot_fup_uc" ] }, { "page": "round_output", "title": "Round Numeric Data (Any Level and Assay)", "topics": [ "round_output" ] }, { "page": "runjagsdata.to.list", "title": "Convert a runjags-class object to a list", "topics": [ "runjagsdata.to.list" ] }, { "page": "sample_verification", "title": "Add Sample Verification 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